{"id":2896,"date":"2025-07-07T16:25:54","date_gmt":"2025-07-07T20:25:54","guid":{"rendered":"https:\/\/gen-fish.ca\/?page_id=2896"},"modified":"2025-07-07T16:46:51","modified_gmt":"2025-07-07T20:46:51","slug":"publications","status":"publish","type":"page","link":"https:\/\/gen-fish.ca\/fr\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"
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Publications<\/h2>\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t
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FISH SURVEY DATABASE
environmental DNA, metabarcoding, scDNA<\/h5>\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t
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Charron, M.R., Yates, M.C., Heath, D. 2025. Stomach Content DNA (scDNA) Detection and Quantification for Predator Diet Assessment Using High-Throughput Nanofluidic Chip Technology: Species-Specific qPCR Assay Panel Development and Validation. Molecular Ecology Resources :e14106. https:\/\/doi.org\/10.1111\/1755-0998.14106<\/p>

Sandhu, R., Yates, M., Marques, P., Heath, D., Mandrak, N.E. 2025. Using Environmental DNA Metabarcoding to Determine Endangered Redside Dace Occurrence and Associated Community Composition in Urban Streams. Canadian Journal of Fisheries and Aquatic Sciences 0:0. In Press.<\/p>

Yates, M.C., Wilcox, T.M., Kay, S., Peres-Neto, P., Heath, D.D. 2025. A Framework to Unify the Relationship Between Numerical Abundance, Biomass, and Environmental DNA. Environmental DNA 7:e70073. https:\/\/doi.org\/10.1002\/edn3.70073<\/p>

Morey, K., Myler, E., Hanner, R., Tetreault, G. 2024. Taxonomic Blind Spots: A Limitation of Environmental DNA Metabarcoding-Based Detection for Canadian Freshwater Fishes. Environmental DNA 6:e70054. https:\/\/doi.org\/10.1002\/edn3.70054<\/p>

Gallage, K.S., Van Nynatten, A., Lujan, N.K., Lovejoy, N.R., Mandrak, N.E. 2023. Identifying early life stages of Great Lakes fishes using a metabarcoding approach. Canadian Journal of Fisheries and Aquatic Sciences 80:1813\u20131823. https:\/\/doi.org\/10.1139\/cjfas-2023-0061<\/p>

Van Nynatten, A., Gallage, K.S., Lujan, N.K., Mandrak, N.E., Lovejoy, N.R. 2023. Ichthyoplankton metabarcoding: An efficient tool for early detection of invasive species establishment. Molecular Ecology Resources 23:1319\u20131333. https:\/\/doi.org\/10.1111\/1755-0998.13803<\/p>

Bernos, T.A., Yates, M.C., Docker, M.F., Fitzgerald, A., Hanner, R., Heath, D., Imrit, A., Livernois, J., Myler, E., Patel, K., Sharma, S., Young, R., Mandrak, N.E. 2023. Environmental DNA (eDNA) applications in freshwater fisheries management and conservation in Canada: overview of current challenges and opportunities. Canadian Journal of Fisheries and Aquatic Sciences 80:1170\u20131186. https:\/\/doi.org\/10.1139\/cjfas-2022-0162<\/p>

Mauvisseau, Q., Harper, L.R., Sander, M., Hanner, R.H., Kleyer, H., Deiner, K. 2022. The Multiple States of Environmental DNA and What Is Known about Their Persistence in Aquatic Environments. Environmental Science and Technology 56:5322\u20135333. https:\/\/pubs.acs.org\/doi\/10.1021\/acs.est.1c07638<\/p>

Nolan, K.P., Loeza\u2010Quintana, T., Little, H.A., McLeod, J., Ranger, B., Borque, D.A., Hanner, R.H. 2022. Detection of brook trout in spatiotemporally separate locations using validated eDNA technology. Journal of Environmental Studies and Sciences :66\u201382. https:\/\/doi.org\/10.1007\/s13412-022-00800-x<\/p>

Wu, Y., Colborne, S.F., Charron, M.R., Heath, D.D. 2022. Development and validation of targeted environmental DNA (eDNA) metabarcoding for early detection of 69 invasive fishes and aquatic invertebrates. Environmental DNA 5:73\u201384. https:\/\/doi.org\/10.1002\/edn3.359<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t

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FISH HEALTH PANEL
transcriptomics, gene expression, stressors<\/h5>\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t
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Thraya, M., Patel, A., Stewart, K., Abou-Akl, H., Roberts, D., Heath, D., Pitcher, T.E., Carmona-Alcocer, V., Karpowicz, P. 2025. Integration of photoperiod and time-restricted feeding on the circadian gene expression rhythms in juvenile salmon. Scientific Reports 15:16156. https:\/\/doi.org\/10.1038\/s41598-025-01069-0<\/p>

Durhack, T.C., Thorstensen, M.J., Mackey, T.E., Aminot, M., Lawrence, M.J., Audet, C., Enders, E.C., Jeffries, K.M. 2025. Behavioural responses to acute warming precede critical shifts in the cellular and physiological thermal stress responses in a salmonid fish (brook trout, Salvelinus fontinalis). Journal of Experimental Biology 228:JEB249964. https:\/\/doi.org\/10.1242\/jeb.249964<\/p>

Roberts, D., Madliger, C.L., Mokdad, A.I., Firth, B.L., Pitcher, T.E. 2025. Evaluating the effects of probiotic supplementation and structural enrichment prior to transportation on the stress physiology of reintroduced juvenile Atlantic salmon. Environmental Biology of Fishes :. https:\/\/doi.org\/10.1007\/s10641-025-01691-x<\/p>

Banousse, G., Semeniuk, C., Garant, D., Jeffrey, J., Islam, S.K.S., Bernier, N., Jeffries, K., Audet, C. 2025. Genetic and environmental basis of transcriptional thermal plasticity of brook charr (Salvelinus fontinalis) fry. Canadian Journal of Fisheries and Aquatic Sciences 82:1\u201315. https:\/\/doi.org\/10.1139\/cjfas-2024-0205<\/p>

Culbert, B.M., Mossington, E., McCormick, S.D., Bernier, N.J. 2025. Regulation and function of the gill corticotropin-releasing factor system during osmoregulatory disturbances in Atlantic salmon. Journal of Experimental Biology 228:JEB248168. https:\/\/doi.org\/10.1242\/jeb.248168<\/p>

Culbert, B.M., McCormick, S.D., Bernier, N.J. 2025. Effects of environmental salinity on global and endocrine-specific transcriptomic profiles in the caudal neurosecretory system of salmonid fishes. The FASEB Journal 39:e70477. https:\/\/doi.org\/10.1096\/fj.202403241R<\/p>

Best, C., Durhack, T.C., Chapelsky, A.J., Aminot, M., Islam, S.S., Heath, D.D., Mochnacz, N.J., Jeffries, K.M. 2025. Transcriptional profiling provides insights on sublethal thermal stress thresholds in juvenile bull trout. Canadian Journal of Fisheries and Aquatic Sciences 0:0. https:\/\/doi.org\/10.1139\/cjfas-2024-0378<\/p>

Beach, R.K., Dycha, G.M., Wilder, A., Semeniuk, C.A.D., Heath, D.D., Higgs, D.M. 2025. No trout about it: behavioural and transcriptional effects of long-term noise exposure in brook trout (Salvelinus fontinalis). Canadian Journal of Fisheries and Aquatic Sciences 82:1\u201316. https:\/\/doi.org\/10.1139\/cjfas-2024-0288<\/p>

Beach, R.K., LeBlanc, J., Higgs, D.M. 2025. An Integrated Approach to Understanding Noise Stress in Two Auditorily Diverse Species of Freshwater Fish. Canadian Journal of Fisheries and Aquatic Sciences 0:0. In Press.<\/p>

Audet, C., Garant, D., Crespel, A., Vagner, M. 2025. How genomic and environmental relationships shape phenotypic plasticity in brook charr Salvelinus fontinalis: an historical review. Frontiers in Fish Science 3:1525181. https:\/\/doi.org\/10.3389\/frish.2025.1525181<\/p>

Weinrauch, A.M., Lazaro-C\u00f4t\u00e9, A., Durhack, T.C., Enders, E.C., Jeffries, K.M. 2025. Cellular responses to thermal stress and moderate oxygen limitation in juvenile lake trout. Journal of Fish Biology :1\u201317. https:\/\/doi.org\/10.1111\/jfb.70111<\/p>

Wilder, A.S., Wilson, C.C., Warriner, T.R., Semeniuk, C.A.D. 2024. Effects of generations in captivity and elevated rearing temperature on Ontario hatchery brook trout (Salvelinus fontinalis) fry quality and survival. Environmental Biology of Fishes 107:275\u2013292. https:\/\/doi.org\/10.1007\/s10641-024-01528-z<\/p>

Soto-D\u00e1vila, M., Webb, R.A., Rodr\u00edguez-Ramos, T., McDonald, G., Dang, X., Heath, J.W., Reid, G., Dixon, B. 2024. Effect of dietary supplementation of probiotic on growth, survival, and immune-related biomarkers in Chinook Salmon (Oncorhynchus tshawytscha) challenged with Vibrio anguillarum. Aquaculture 583:740582. https:\/\/doi.org\/10.1016\/j.aquaculture.2024.740582<\/p>

Auclert, L.Z., Chhanda, M.S., Derome, N. 2024. Interwoven processes in fish development: microbial community succession and immune maturation. PeerJ 12:e17051. https:\/\/doi.org\/10.7717\/peerj.17051<\/p>

Amill, F., Gauthier, J., Rautio, M., Derome, N. 2024. Characterization of gill bacterial microbiota in wild Arctic char (Salvelinus alpinus) across lakes, rivers, and bays in the Canadian Arctic ecosystems. Microbiol Spectr 12:e02943-23. https:\/\/doi.org\/10.1128\/spectrum.02943-23<\/p>

Banousse, G., Normandeau, E., Semeniuk, C., Bernatchez, L., Audet, C. 2024. Parental thermal environment controls the offspring phenotype in Brook charr (Salvelinus fontinalis): insights from a transcriptomic study. G3 Genes|Genomes|Genetics 14:jkae051. https:\/\/doi.org\/10.1093\/g3journal\/jkae051<\/p>

Chhanda, M.S., Fran\u00e7ois, N.R.L., Auclert, L.Z., Derome, N. 2024. Cultivation of Brook Charr Salvelinus fontinalis: The Challenges of Disease Control and the Promise of Microbial Ecology Management. Aquaculture Research 2024:. https:\/\/doi.org\/10.1155\/2024\/2279222<\/p>

Sadeghi, J., Zaib, F., Heath, D.D. 2024. Genetic architecture and correlations between the gut microbiome and gut gene transcription in Chinook salmon (Oncorhynchus tshawytscha). Heredity 133:54\u201366. https:\/\/doi.org\/10.1038\/s41437-024-00692-3<\/p>

Frank, C.E., Sadeghi, .J, Heath, D.D., Semeniuk, C.A.D. 2024. Behavioral transcriptomic effects of triploidy and probiotic therapy (Bifidobacterium, Lactobacillus, and Lactococcus mixture) on juvenile Chinook salmon (Oncorhynchus tshawytscha). Genes Brain Behav 23:e12898. https:\/\/doi.org\/10.1111\/gbb.12898<\/p>

Roberts, D., Madliger, C.L., Mokdad, A.I., Pitcher, T.E. 2024. Comparing the stress physiology of hard- and soft-released juvenile Atlantic Salmon after transportation for reintroduction. North American Journal of Fisheries Management 44:1268\u20131279. https:\/\/doi.org\/10.1002\/nafm.11045<\/p>

Mart\u00ednez-Silva, M.A., Dupont-Prinet, A., Houle, C., Vagner, M., Garant, D., Bernatchez, L., Audet, C. 2023. Growth regulation in brook charr Salvelinus fontinalis. General and Comparative Endocrinology 331:114160. https:\/\/doi.org\/10.1016\/j.ygcen.2022.114160<\/p>

Penny, F., Bugg, W.S., Kieffer, J.D., Jeffries, K.M., Pavey, S.A. 2023. Atlantic Sturgeon and Shortnose Sturgeon exhibit highly divergent transcriptomic responses to acute heat stress. Comparative Biochemistry and Physiology Part D: Genomics and Proteomics 45:101058. https:\/\/doi.org\/10.1016\/j.cbd.2023.101058<\/p>

Jeffrey, J.D., Thorstensen, M.J., Enders, E.C., Treberg, J.R., Jeffries, K.M. 2023. Using transcriptomics to examine the physiological status of wild-caught walleye (Sander vitreus). FACETS 8:1\u201315. https:\/\/doi.org\/10.1139\/facets-2022-0177<\/p>

Jourdain-Bonneau, C., Deslauriers, D., Gourtay, C., Jeffries, K.M., Audet, C. 2023. Metabolic and transcriptomic response of two juvenile anadromous brook charr (Salvelinus fontinalis) genetic lines towards a chronic thermal stress. Canadian Journal of Zoology e-First:1\u201316. https:\/\/doi.org\/10.1139\/cjz-2023-0049<\/p>

Bendig, T.A., Dycha, G.M., Bull, E.M., Ayala-Osorio, R., Higgs, D.M. 2023. A comparative analysis of form and function in Centrarchidae hearing ability: Does otolith variation affect auditory responsiveness?. The Journal of the Acoustical Society of America 154:772\u2013780. https:\/\/doi.org\/10.1121\/10.0020587<\/p>

Haniford, L.S.E., LaRochelle, L., Robichaud, J.A., Burton, D., Cooke, S.J. 2023. Evaluating blood, gill, and muscle biopsy methods on the behaviour, reproductive success, and survival of a wild freshwater fish. Applied Animal Behaviour Science 265:106004. https:\/\/doi.org\/10.1016\/j.applanim.2023.106004<\/p>

Penny, F.M., , Pavey, S.A. 2023. Transcriptomic analyses of juvenile Striped Bass (Morone saxatilis) exposed to chronic and acute temperature change. PLOS ONE 18:e0289372. https:\/\/doi.org\/10.1371\/journal.pone.0289372<\/p>

Campbell, J.H., Dang, X., Rodr\u00edguez-Famos, T., Carpio, Y., Estrada, M.P., Dixon, B. 2023. The effect of PACAP administration on LPS-induced cytokine expression in the Atlantic salmon SHK-1 cell line.. Fish and Shellfish Immunology Reports 5:100116. https:\/\/doi.org\/10.1016\/j.fsirep.2023.100116<\/p>

Thorstensen, M.J., Vandervelde, C.A., Bugg, W.S., Michaleski, S., Vo, Linh, Mackey, T.E., Lawrence, M.J., Jeffries, K.M. 2022. Non-lethal sampling supports integrative movement research in freshwater fish. Frontiers in Genetics 13:795355. https:\/\/doi.org\/10.3389\/fgene.2022.795355<\/p>

Semeniuk, C.A.D., Jeffries, K.M., Li, T., Bettles, C.M., Cooke, S.J., Dufour, B.A., Halfyard, E.A., Heath, J.W., Keeshig, K., Mandrak, N.E., Muir, A.J., Postma, L., Heath, D.D. 2022. Innovating Transcriptomics for Practitioners in Freshwater Fish Management and Conservation: Best Practices Across Diverse Resource-sector Users. Reviews in Fisheries and Fish Biology 32:921\u2013939. https:\/\/doi.org\/10.1007\/s11160-022-09715-w<\/p>

Jeffries, K.M., Jeffrey, J.D., Holland, E.B. 2022. Chapter 8 – Applied aspects of gene function for the conservation of fishes. Fish Physiology 39:389\u2013433. https:\/\/doi.org\/10.1016\/bs.fp.2022.04.008<\/p>

Jeffries, K.M., Michaleski, S., Bernier, N.J., Heath, D.D., Miller, K.M., Teffer, A. 2021. The use of non-lethal sampling for transcriptomics to assess the physiological status of wild fishes. Comparative Biochemistry and Physiology, Part B 256:110629. https:\/\/doi.org\/10.1016\/j.cbpb.2021.110629<\/p>

Turko, A.J., LeClair, A.T.A., Mandrak, N.E., Drake, D.A.R., Scott, G.R., Pitcher, T.E. 2021. Choosing source populations for conservation reintroductions: lessons from variation in thermal tolerance among populations of the imperilled redside dace. Canadian Journal of Fisheries and Aquatic Sciences 78:1347\u20131355. http:\/\/dx.doi.org\/10.1139\/cjfas-2020-0377<\/p>

Turko, A.J., Nolan, C.B., Balshine, S., Scott, G.R., Pitcher, T.E. 2020. Thermal tolerance depends on season, age and body condition in imperilled redside dace\u00a0Clinostomus elongatus. Conservation Physiology 8:coaa062. https:\/\/doi.org\/10.1093\/conphys\/coaa062<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t

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DECISION-GUIDING TOOLS
challenges, media, ethics<\/h5>\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t
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A. Howarth, Cooke, S.J., V.M. Nguyen 2025. It takes all kinds: a composite approach to sustainability in Canadian freshwater fisheries. Canadian Journal of Fisheries and Aquatic Sciences 0:0. In Press.<\/p>

Howarth, A., Nguyen, V.M., Cooke, S.J. 2023. Managing Canadian freshwater fisheries: persistent challenges and emerging opportunities. Canadian Journal of Fisheries and Aquatic Sciences 80:1436\u20131455. http:\/\/dx.doi.org\/10.1139\/cjfas-2023-0011<\/p>

Piczak, M.L., Brooks, J.L., Bard, B., Bihun, C.J., Howarth. A., Jeanson, A.L., LaRochelle, L., Bennett, J.R., Lapointe, N.W.R., Mandrak, N.E., Cooke, S.J. 2022. Revisiting the challenge: perspectives on Canada\u2019s freshwater fisheries policies three decades after the Pearse Report. FACETS 7:912\u2013935. https:\/\/doi.org\/10.1139\/facets-2021-0145<\/p>

Fitzgerald, A., Heath, D., Halliday, J. 2021. Environmental DNA as Novel Technology: Lessons in Agenda Setting and Framing in News Media. Animals 11:2874. https:\/\/doi.org\/10.3390\/ani11102874<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t<\/div>","protected":false},"excerpt":{"rendered":"

Publications FISH SURVEY DATABASEenvironmental DNA, metabarcoding, scDNA Charron, M.R., Yates, M.C., Heath, D. 2025. Stomach Content DNA (scDNA) Detection and Quantification for Predator Diet Assessment Using High-Throughput Nanofluidic Chip Technology:…<\/p>","protected":false},"author":8,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"nf_dc_page":"","_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"footnotes":""},"class_list":["post-2896","page","type-page","status-publish","hentry"],"yoast_head":"\nPublications » GEN-FISH<\/title>\n<meta name=\"description\" content=\"A collection of the scientific articles published through GEN-FISH.\" \/>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/gen-fish.ca\/fr\/publications\/\" \/>\n<meta property=\"og:locale\" content=\"fr_CA\" \/>\n<meta property=\"og:type\" 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